Jacks Lab, Center for cancer research,MIT
| 1. |
Each tail should be in a clean eppendorf tube. |
| 2. |
Add 500µl of tail lysis buffer containing Proteinase K (PK) to each tube. |
| 3. |
Incubate tail samples in 50-60C water bath overnight. |
| 4. |
Add 250µl saturated (6M) NaCl to each tube. |
| 5. |
Shake tubes vigorously (~ 20 times) and incubate tubes on ice for 10 minutes. |
| 6. |
Spin tubes on low speed (#6 on Hemle centrifuge) at 4C for 10 minutes. |
| 7. |
Remove supernatant and place into a clean eppendorf. |
| 8. |
Add 650µl isopropanol and invert to mix. Incubate tubes at room temperature for 15 minutes. |
| 9. |
recover DNA by centrifuging, max speed, 10 minutes at room temp. |
| 10. |
Place tubes inverted on bench and allow to air dry 5 minutes. |
| 11. |
Add 200µl of TE pH 7.5 or sterile water to each tube. Incubate in 50-60C water bath for * 10 minutes. Resuspend pellet by pipetting up and down several times. |
Tail Lysis Buffer:
| |
Final Concentration
|
per 500ml
|
| 1M Tris pH 8.0 |
10mM
|
5ml
|
| 5M NaCl |
100mM
|
10ml
|
| 0.5M EDTA pH 8.0 |
10mM
|
10ml
|
| 10% SDS |
0.5%
|
25ml
|
| dH20 |
|
to 500ml
|
Proteinase K concentration:
Add 20µl of a 20 mg/ml stock per 1ml of tail lysis buffer.
ES Cells:
For ES Cells the protocol is very much the same except for the following:
All steps are done in a well of a 24 or 6-well dish.
The initial incubation in the lysis buffer is done at 37C for 2 hours to overnight.
Southerns:
For important southerns:
| 1. |
Dilute DNA in 400µl of water. |
| 2. |
P henol/chloroform extract DNA. |
| 3. |
Precipitate in 1/10 vol 3M NaOAc and equal volume of isopropanol. |
| 4. |
Precipitate 15 minutes at RT. |
| 5. |
Wash pellet with 70% EtoH. |
| 6. |
Resuspend in water. |
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