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2. Phase Separation
a. Incubate samples (from 1g) for 5 minutes at room temperature.
b. Add 0.2 ml of chloroform to each tube.
b. Cap each tube. Shake samples vigorously by hand for 15 seconds.
c. Incubate samples for 5 minutes at room temperature.
d. Centrifuge samples for 15 minutes at 12,000 x g at 4oC.
3. RNA Precipitation
a. Transfer the upper aqueous phase to a fresh tube.
b. Add 0.5 ml of isopropyl alcohol to precipitate RNA. If this RNA will be used for RT-PCR, first add 50 μl isopropyl alcohol, mix, incubate the samples at room temperature for 5 minutes and centrifuge at 12,000 x g for 10 minutes at 4oC. Transfer the sample in a new tube.
c. Incubate for 5-10 minutes at room temperature.
d. Centrifuge for 10 minutes at 12,000 x g at 4oC. The RNA will form a pellet on the side or bottom of the tube.
4. RNA Wash
a. Discard the supernatant.
b. Wash pellet with 1 ml 75% ethanol.
c. Mix sample by vortexing. The RNA pellet may float.
d. Centrifuge at 12000 x g for 5 minutes at 4oC. If this RNA will be used for RT-PCR repeat steps a,b and c twice.
e. RNA pellet may be stored in ethanol at -70oC for months.
5. Redissolving the RNA
a. Remove supernatant.
b. Air dry the pellet for 5-10 minutes. Do not completely dry out the pellet.
c. Dissolve pellet in 30 to 60 μl RNase free water or 0.5% SDS by passing the solution through a pipette tip and incubating for 10 minutes at 55-60oC.
6. Determination of
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